Molecular Profiling in Tissue Samples From Patients With Cancer Who Are Exceptional Responders to Treatment
Conditions:
Malignant Neoplasm
Sponsor: National Cancer Institute (NCI)
trial.available_in:
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Overview
This pilot research trial studies molecular profiling in tissue samples from patients with cancer who got better with treatment that didn't work for most other patients with the same disease. Studying samples of tissue from patients with cancer in the laboratory may help doctors learn more about changes that occur in deoxyribonucleic acid (DNA) and identify biomarkers related to how well patients respond to treatment.
Description
PRIMARY OBJECTIVES:
I. To identify molecular indicators in malignant tissues from patients who were exceptional responders on clinical trials or standard systemic treatments using whole exome and/or targeted deep sequencing, as well as potentially other sequencing and other molecular characterization methods (if adequate tissue exists).
II. To explore associations between the identified molecular indicators and the putative mechanism of action of the treatment received by the patient.
III. To test the feasibility of identifying "exceptional responders", obtaining the relevant tumor and normal tissue and clinical data, and performing whole exome and/or targeted deep sequencing on these samples.
OUTLINE:
Previously collected tissue samples are analyzed via whole exome sequencing and/or targeted next generation sequencing (NGS) assay deep sequencing. Cases for which sufficient nucleic acid amounts are available will undergo additional analyses including whole genome sequencing, messenger ribonucleic acid (RNA) (mRNA)-sequencing, micro (miRNA) sequencing, promoter methylation analysis, and single nucleotide polymorphism (SNP) analysis.
Who can participate
Inclusion Criteria:
* Documented exceptional response, defined as patients meeting the following criteria:
* Complete response to a regimen in which complete response is expected in \< 10% of similarly treated patients
* Partial response (PR) \> 6 months in a regimen in which PRs \> 6 months are expected in \< 10% of patients with similar disease treated with same or similar regimen
* Complete response (CR) or PR of unusual duration, such that the internal review committee considers it to be an exceptional response; examples below:
* PR of duration \> 3 x the median expected PR duration (in cases where PR is expected in \> 10% of patients with the same disease treated with the same regimen)
* CR or duration \> 3 x the median expected CR duration (in cases where CR may be seen in \> 10% of patients with same disease treated with same regimen)
* The observed duration of CR (or PR) is longer than expected for 90% of patients with same disease treated with same regimen
* Note: it is not required that the patient be enrolled on a clinical trial when the exceptional response was observed
* Reports of radiologic scans or other evidence documenting response will be submitted for review; cases where response is not assessable (e.g. adjuvant treatment) will not be eligible because the outcome can not be attributed to a specific treatment
* Treatment history must be available, for prior treatment and for the drug to which the exceptional response occurred
* Patient must meet consent criteria; this requires: (i) current exceptional responder (ER) consent by a living participant not lost to follow-up, (ii) prior consent for future research by a participant not known to be deceased, but lost to follow-up, or (iii) if patient is deceased and did not decline to participate in research at the time of tissue removal for any tissue that would be used in this study, then no consent is required
* Tumor sample available that meets study requirements
* Required tumor samples MUST exist and be able to be submitted; investigators wishing to submit samples must not have made agreements that would prohibit the free use of data from such samples; the National Cancer Institute (NCI) will provide investigators with a letter for the collaborator amending their existing agreement to allow for the case to be submitted
* Tumor tissue from prior to administration of the drug to which the exceptional response occurred is required; ideally this sample will have been collected just prior to treatment, but other prior tissue will be considered; tissue may be fresh frozen or formalin-fixed paraffin embedded
* Tumor tissue amount must be at least a core biopsy, and meet minimum specimen requirements
* Encouraged: normal tissue sample: (optional): blood or other specimen source for germline sequencing
* The tumor samples and clinical data submitted to the Exceptional Responders Database in database in Genotypes and Phenotypes (dbGaP) will need to have appropriate agreements in place to allow for the submission; the Exceptional Responders Database can accept clinical data and samples from cases enrolled on a Cancer Therapy Evaluation Program (CTEP) sponsored clinical trial and cases that were not enrolled on any clinical trial; if the response occurred on a trial that was not CTEP-sponsored, there are existing agreements between the submitting site and the pharmaceutical company; if existing agreements do not allow for the submission of sample and clinical data, the NCI will provide the investigators with a letter that allows the tissue to be used for the exceptional responders study if signed by the appropriate collaborator; the letter modifies the existing agreement to include the CTEP Intellectual Property (IP) Option language that would allow the case to be submitted to the Exceptional Responders Database; if the existing agreement cannot be modified and the letter cannot be signed, the proposed case will not be accepted; Note: as stated above, the patient does not need to have been enrolled on a clinical trial to be eligible for the exceptional responders study
Exclusion Criteria:
* Patient's response did not meet criteria for an exceptional response
* Patient's treatment regimen is expected to lead to CR or durable PR in \> 10% of patients
* Patient's duration of response is not \> 3 x expected median length of response
* Response not evaluable or not able to be attributed to systemic treatment (e.g. adjuvant treatment)
* Patient refused consent for use of tissue for research activities included in the exceptional responders study
* Tumor sample from prior to the exceptional response is not available, or does not meet quality metrics
Interventions
Laboratory Biomarker Analysis
OTHER
Locations
73
United States (73)
University of New Mexico Cancer Center
Albuquerque , New Mexico
Trinity Health Saint Joseph Mercy Hospital Ann Arbor
Ann Arbor , Michigan
University of Michigan Rogel Cancer Center
Ann Arbor , Michigan
Emory University Hospital/Winship Cancer Institute
Atlanta , Georgia
UCHealth University of Colorado Hospital
Aurora , Colorado
National Cancer Institute Developmental Therapeutics Clinic
Bethesda , Maryland
NCI - Center for Cancer Research
Bethesda , Maryland
Saint Alphonsus Cancer Care Center-Boise
Boise , Idaho
Trinity Health Medical Center - Brighton
Brighton , Michigan
Saint Francis Medical Center
Cape Girardeau , Missouri
Physicians' Clinic of Iowa PC
Cedar Rapids , Iowa
University of Virginia Cancer Center
Charlottesville , Virginia
Rush MD Anderson Cancer Center
Chicago , Illinois
Presence Resurrection Medical Center
Chicago , Illinois
John B Amos Cancer Center
Columbus , Georgia
Riverside Methodist Hospital
Columbus , Ohio
Cancer Care Specialists of Illinois - Decatur
Decatur , Illinois
Decatur Memorial Hospital
Decatur , Illinois
Wayne State University/Karmanos Cancer Institute
Detroit , Michigan
City of Hope Comprehensive Cancer Center
Duarte , California
Duke University Medical Center
Durham , North Carolina
NorthShore University HealthSystem-Evanston Hospital
Evanston , Illinois
Sanford Roger Maris Cancer Center
Fargo , North Dakota
Poudre Valley Hospital
Fort Collins , Colorado
Kaiser Permanente-Fresno
Fresno , California
Corewell Health Grand Rapids Hospitals - Butterworth Hospital
Grand Rapids , Michigan
Benefis Sletten Cancer Institute
Great Falls , Montana
Prisma Health Cancer Institute - Butternut
Greenville , South Carolina
Prisma Health Cancer Institute - Faris
Greenville , South Carolina
Greenwich Hospital
Greenwich , Connecticut
Baylor College of Medicine/Dan L Duncan Comprehensive Cancer Center
Houston , Texas
Ben Taub General Hospital
Houston , Texas
Wellmont Holston Valley Hospital and Medical Center
Kingsport , Tennessee
Cancer Centers of Southwest Oklahoma Research
Lawton , Oklahoma
University of Wisconsin Carbone Cancer Center - University Hospital
Madison , Wisconsin
UP Health System Hematology Oncology Marquette
Marquette , Michigan
UP Health System Marquette
Marquette , Michigan
WVUH-Berkely Medical Center
Martinsburg , West Virginia
Helen F Graham Cancer Center
Newark , Delaware
Medical Oncology Hematology Consultants PA
Newark , Delaware
Kaiser Permanente-Oakland
Oakland , California
University of Oklahoma Health Sciences Center
Oklahoma City , Oklahoma
Illinois CancerCare-Peoria
Peoria , Illinois
Reading Hospital McGlinn Cancer Institute at Phoenixville
Phoenixville , Pennsylvania
Kaiser Permanente Northwest
Portland , Oregon
Portsmouth Regional Hospital
Portsmouth , New Hampshire
Kaiser Permanente-Richmond
Richmond , California
University of Rochester
Rochester , New York
Huntsman Cancer Institute/University of Utah
Salt Lake City , Utah
University of Texas Health Science Center at San Antonio
San Antonio , Texas
UCSF Medical Center-Mission Bay
San Francisco , California
Kaiser Permanente Medical Center - Santa Clara
Santa Clara , California
Kaiser Permanente-Santa Rosa
Santa Rosa , California
Prisma Health Cancer Institute - Seneca
Seneca , South Carolina
Sanford Cancer Center Oncology Clinic
Sioux Falls , South Dakota
Sanford USD Medical Center - Sioux Falls
Sioux Falls , South Dakota
Henry Ford Health Providence Southfield Hospital
Southfield , Michigan
Springfield Clinic
Springfield , Illinois
Mercy Hospital Springfield
Springfield , Missouri
CoxHealth South Hospital
Springfield , Missouri
Washington University School of Medicine
St Louis , Missouri
Missouri Baptist Medical Center
St Louis , Missouri
Mercy Hospital Saint Louis
St Louis , Missouri
Kaiser Permanente-Stockton
Stockton , California
Aurora Medical Center in Summit
Summit , Wisconsin
South Georgia Medical Center/Pearlman Cancer Center